The story begins with Wolverine attacking some drug dealers and then he sends a message to Lord Shingen throw then. Shingen sends The Hand after Wolverine, but he defeat and arrests every ninja. Meanwhile Mariko doesn't know what to do, she loves Wolverine but her father Shingen made her married Noburu Hideki, and now she knows that they both are bad guys. Yukio tries to enter Shingen's fortress but is captured by the Hand. She fights against Lord Shingen but Mariko stops the fight. Then Wolverine enters the fortress, and Yukio helps him, killing Noburu. Wolverine battles and is almost killed by Lord Shingen, but at the end he kills Lord Shingen. Then Mariko gives the Ashida's sword to Logan, saying that he deserves it more than his father and she is proud of him.