All questions are answered and all fates determined in the final chapter of "The Return of the King"!
Magneto, incarcerated in his plastic prison cell, is paid a visit by Charles Xavier. Charles is there to discuss Magneto's attitude to Homo sapiens and to begin preparing for Magneto's legal defense.
In the Canadian wilderness, Wolverine has been living rough and off the land. He's tracked down by Cyclops who, after blasting him and expelling him from the X-Men, wishes to apologize and welcome Wolverine back into the fold.