@tylertothemax: Oh man, if you went from House of M straight to Messiah Complex you missed some of the greatest X-Men stories.
Peter David's Madrox mini series and the following ongoing X-Factor is fantastic. It ties in directly with House of M and Messiah Complex. Highly recommended.
X-Men vol 2 188-204 (Collected in TPB as Supernovas and Blinded by the Light) ties in with the start of Messiah Complex. It focuses on a very different X-Men lineup lead by Rogue, and has some great Chris Bachalo art.
Endangered Species is a prelude to Messiah Complex that focuses on Beast. I feel it really illustrates how serious and desperate the situation is for the X-Men leading up to Messiah Complex.
I have heard people say good things about Kyle and Yost's New X-Men although I haven't read it myself.
Last but certainly not least is Whedon's Astonishing X-Men run. This takes place just before Messiah Complex and is required reading for all X-Men fans.
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